6 posts
A practical, opinionated toolchain for analyzing your own genome, transcriptome, proteome, and biomarker data: which tools to use at each layer, the flags that matter, and where the failure modes are.
A practical software stack that takes a personal 30x whole genome from FASTQ to annotated variants, with the failure modes that waste days.
A working list of the tools that matter for analyzing your own genome, transcriptome, proteome, and biomarker data, with formats, flags, and the failure modes that bite.
A practical map of the software that turns raw multi-omics files into results you can query, with the commands, formats, and failure modes that matter for a single person's data.
Cloning tools like SnapGene and Geneious answer a different question than personal genome analysis. A concrete stack for going from FASTQ to annotated variants, with the tools, flags, file formats, and failure modes that matter.
A concrete stack for working with personal genome, transcriptome, proteome, and biomarker data: file formats, tools, commands, and where each approach breaks down.