How to Choose a Whole Genome Sequencing Company
A practical ranking framework for consumer and clinical whole genome sequencing: what coverage, platform, file formats, and data rights to demand, and how to verify what you received.
4 posts
A practical ranking framework for consumer and clinical whole genome sequencing: what coverage, platform, file formats, and data rights to demand, and how to verify what you received.
A technical comparison of genotyping arrays, exome sequencing and whole-genome sequencing, with the quality metrics to demand from each.
Genotyping arrays, exomes, and whole genomes fail in different ways and in different places. Here is where the errors live, how to check your own data, and what accuracy numbers mean per-variant rather than per-test.
A whole-genome sequencing sample is usually 4–10 mL of EDTA blood or a saliva kit; what comes back is 80–120 Gbp of reads, a CRAM, and a VCF with roughly 4–5 million variants. Here is how to judge the sample, the files, and the costs.